iFlow Platform

Welcome to iFlow — a clinical genomics data platform for laboratories that run hereditary and somatic sequencing tests. iFlow covers the full path from sample intake through a signed, immutable clinical report.

New to iFlow? Start with the default scenario

The default scenario walkthrough follows one case from intake through sign-off. It is the fastest way to get a feel for the whole product.

What iFlow does

• Intake — register subjects, register samples, create clinical orders.
• Analysis — run configured bioinformatics pipelines (Nextflow / WDL on cloud infrastructure) and ingest the resulting VCFs.
• Review — curate variants against external evidence (NCCN, AMP / ASCO / CAP, ACMG, CKB, CIViC, FDA) and prepare a report draft.
• Sign-off — approve, atomically write an immutable signed PDF, and close the order.
• Amend — produce corrected signed reports post-hoc while preserving the original.

Read the Intended Use page before using iFlow for live clinical work.

Walkthroughs

Workflows

Journey-first walkthroughs of each clinical stage: intake, analysis, review, sign-off, amendments.

Open

Reference

Intended use, glossary, RBAC matrix, project bucket file paths.

Open

Default Scenario

End-to-end walkthrough of a single case.

Open

Services

Miner

Clinical core — orders, samples, subjects, analyses, labflows, variants, VCF browser.

Open

Report

Clinical reports, sign-off PDF, snapshots, comments, amendments.

Open

Admin Console

Organizations, projects, users, cloud credentials.

Open

File Browser

Browse, upload, and download files from the project bucket.

Open

Compute

Run bioinformatics pipelines and monitor job execution.

Open

Quick Start

Web interfaceCommand line

1. Contact your organization administrator for an account.
2. Open the admin console at https://admin.<your-env-domain> and sign in.
3. Switch to the project you will be working in.
4. Follow the default scenario walkthrough.

# Install the CLI
pip install intelliseq-iflow

# Authenticate with a Personal Access Token
iflow login --token "$IFLOW_PAT"

# Select the default project
iflow config select-project

# Inspect orders
iflow orders list

See the CLI Installation and Order Management guides.

Get Started Default Scenario CLI Guide

Reference

• Intended Use — what iFlow is and is not designed for.
• Glossary — ACMG, AMP, VAF, tier definitions and more.
• RBAC Matrix — who is allowed to do what.
• API Reference — full endpoint catalogue.

Need help?

• CLI tool — intelliseq-iflow. See Installation.
• API reference — programmatic integration. See API Docs.
• Developer docs — for contributors and integrators; see your organization's internal developer portal.